Image credits

In this tutorial, we used the following images from public sources. The usage of these images is in accordance with the respective licenses. Please cite the original sources as indicated below:

• cells3d:
  • original file name: name unchange
  • citation and source: scikit-image sample image datasetꜛ, provided by the Allen Institute for Cell Science
  • dimensions: 3D+2Ch
• imageJ_sample_3D_stack.tif:
  • original file name: 5602-01_4_568_633_x63_stack2_Channel_BLUE.tif
  • citation and source: ImageJ sample image setꜛ
  • dimensions: 3D
• blobs_clesperanto.tif:
  • original file name: blobs.tif
  • citation and source: py-clesperanto sample datasetꜛ by Robert Haase (Mastodonꜛ, Twitterꜛ, GitHubꜛ)
  • dimensions: 2D
• timelapse_ca_imaging_suite2p_file_00002_00001.tif:
  • original file name: 5602-file_00002_00001.tif
  • citation and source: Suite2p sample image datasetꜛ by Marius Pachitariu, Carsen Stringer and Kenneth D. Harris (2018), Robustness of Spike Deconvolution for Neuronal Calcium Imaging, ꜛ, Journal of Neuroscience 12 September 2018, 38 (37) 7976-7985; DOI: 10.1523/JNEUROSCI.3339-17.2018
  • dimensions: 2D+1
• R1_cell migration R1 - Position 79_XY1562686175_Z0_T00_C1.tif:
  • original file name: name unchanged
  • citation and source: part of the Combining StarDist and TrackMate example 1 - Breast cancer cell dataset by Jacquemet (2020), Zenodo. https://doi.org/10.5281/zenodo.4034976
  • dimensions: 2D+1
• picasso_mouse_spinalcord_small.tif, picasso_LMNB1_source.tiff, picasso_GFAP_sink.tiff:
  • original file name: name unchanged
  • citation and source: PICASSO sample image datasetꜛ
  • dimensions: 2D+3Ch
• test_lsm_ch0.tif and test_lsm_ch0.tif:
  • original file name: test_lsm.tif
  • citation and source: sample dataset from the Napari PartSeg pluginꜛ
  • dimensions: 2D+2Ch
• 47316.tif:
  • original file name: name unchanged
  • citation and source: CIL:47316 from the Cell Image Libraryꜛ. Please cite as Mark Harding (2014) , Staphylococcus aureus, neutrophil, endothelial cell. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL47316ꜛ.
  • dimensions: 2D+2Ch
• neuron_cil_39947.tif:
  • original file name: 39947.tif.tif
  • citation and source: CIL:39947 from the Cell Image Libraryꜛ. Please cite as Maryann Martone, Diana Price, Andrea Thor (2012) CIL:39947, Rattus norvegicus, basket cell. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL39947ꜛ
  • dimensions: 2D
• 36424.tif:
  • original file name: name unchanged
  • citation and source: CIL:36424 from the Cell Image Libraryꜛ. Please cite as Eric A. Bushong, Maryann E. Martone, Mark H. Ellisman (2011) CIL:36424, Rattus norvegicus, astrocyte of the hippocampus, astrocyte. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL36424
  • dimensions: 2D+3Ch
• 36359.tif:
  • original file name: name unchanged
  • citation and source: CIL:36359 from the Cell Image Libraryꜛ. Please cite as Eric A. Bushong, Maryann E. Martone, Mark H. Ellisman (2011) CIL:36359, Rattus norvegicus, astrocyte, astrocyte of the hippocampus. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL36359
  • dimensions: 2D
• 14969.tif:
  • original file name: name unchanged
  • citation and source: CIL:14969 from the Cell Image Libraryꜛ. Please cite as Margaret I. Davis (2011) CIL:14969, Mus musculus, CNS interneuron, pyramidal cell, basket cell. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL14969ꜛ
  • dimensions: 2D+3Ch
• 38912.tif:
  • original file name: name unchanged
  • citation and source: CIL:38912 from the Cell Image Libraryꜛ. Please cite as Matthew Daniels (2011) CIL:38912, Homo sapiens, epithelial cell of cervix. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL38912ꜛ
  • dimensions: 2D+3Ch
• 48106.tif:
  • original file name: name unchange
  • citation and source: CIL:48106 from the Cell Image Libraryꜛ. Please cite as Natalie Prigozhina (2015) CIL:48106, Rattus norvegicus, fetal cardiomyocyte. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL48106ꜛ
  • dimensions: 2D+3Ch
• 13374.tif:
  • original file name: name unchanged
  • citation and source: CIL:13374 from the Cell Image Libraryꜛ. Please cite as Iain M. Porter, Sarah E. McClelland, Guennadi A. Khoudoli, Christopher J. Hunter, Jens S. Andersen, Andrew D. McAinsh, J. Julian Blow, Jason R. Swedlow (2011) CIL:13374, Homo sapiens. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL13374ꜛ
  • dimensions: 3D+3Ch
• timelapse_cil_7669.tif:
  • original file name: 7669.tif
  • citation and source: CIL:7669 from the Cell Image Libraryꜛ. Please cite as Ghosh, Rajarshi, Woodcock, Chris (2010) CIL:7669, Mus musculus. CIL. Dataset. https://doi.org/doi:10.7295/W9CIL7669ꜛ
  • dimensions: 3D+3Ch